chr10_11

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.8

E-value:

0.003

From sequence:

380656

To sequence:

380872

Alignments:

                                  v        v                                                                      NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<................................................-<<<<<-<---<<_ CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG................................................aGCAuGaGAUGGaG 48    
                 +++UGGU A G    GG GA : GG  G GGCAG                                                AG A:GAGA GGAG
    chr10 380656 GGAUGGUAAGG----GGGGAGGGGGG-GGGGCAGccacugcggggguuggcaauggguguaccauccgcaauguggagggcgAGGAGGAGAGGGAG 380746
                 ******99988....57787665555.79*****************************************************99999999999**9 PP

                                                                 v        v                   NC
                 ____________........_~~~~~~>>---->>>>>>-.>>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     49 CUaucAAcaAau........u*[27]*uCcCuCCCaUGCA.CUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 C   CAA A A         U      UC+  CCC:U C  CUGCC C+ CC :  C C +UUCUC CC+CU+U U
    chr10 380747 CACACAAAAGAAaaggggccU*[57]*UCU-CCCCCUCCCcCUGCCUCAUCCUCCCCACGCUUCUCCCCCCUCUCU 380872
                 999999884333444444440...7..777.5567777777*******999999778888**************** PP

>>

RNAfold
>chr10_11
GAUGGUAAGGGGGGAGGGGGGGGGGCAGCCACUGCGGGGGUUGGCAAUGG
GUGUACCAUCCGCAAUGUGGAGGGCGAGGAGGAGAGGGAGCACACAAAAG
AAAAGGGGCCUACGAAAGAGAGGGAUGUGGAGAGUGACCAAGGGACCUAA
ACACAUACGUACGUCUUCUCUCCCCCUCCCCCUGCCUCAUCCUCCCCACG
CUUCUCCCCCCUCUCU
...((..((((((((((((.(((((...(((((((((((((..((.....))..))).))))))..))))((((.(((((((...(((((..............((((........(((((((((((((...((.(.((...)).)))...))))).......)))))))))))))))))))).)))).)))))))).).))))))))))))..)) (-92.10)

Length sequence

: 216

Length match:

215