chr10_12

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.3

E-value:

0.0042

From sequence:

444461

To sequence:

444583

Alignments:

                                             v                     v                      v         v             NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<............-<<<<<-<---<<~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG............aGCAuGaGAUGGa*[41]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUC 119   
                 A+  GG    GAGA+G A A :GGG:A  G: :G            AG : G GAU GA      UC+C CCC : C C: :C CU:CCC: G U 
    chr10 444461 AGCGGGGAGGGAGAGGGAGAGGGGGGAUUGAAGGgggagagagaauAGGGCG-GAUAGA*[17]*UCUCGCCCCCUCCCCUCCCCUCCCCCCGUUU 444566
                 ***************************9999988655444444444444444.444444...8..8999999888888****************** PP

                                   NC
                 ::::::::::::::::: CS
  RF00690    120 CuuucuCuccucuuUuu 136   
                  +  CU+UCCUC  U  
    chr10 444567 UCCCCUUUCCUCCGUCG 444583
                 ***************** PP

>>

RNAfold
>chr10_12
GUGUGAAGCGGGGAGGGAGAGGGAGAGGGGGGAUUGAAGGGGGAGAGAGA
AUAGGGCGGAUAGAUGCAGCCGUGCUGCGAGUCUCGCCCCCUCCCCUCCC
CUCCCCCCGUUUUCCCCUUUCCUCCGUCGUCCUCUU
.......((((((((((((.(((((((((((((......((((((.(((....((((((((...((((((...)))))).))).))))).)))..)))))))))))))..)))))).)))))))).))))...... (-71.90)

Length sequence

: 136

Length match:

121