chr10_13

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

42.4

E-value:

0.00022

From sequence:

143329

To sequence:

143496

Alignments:

                   v     v       v           v v            v v           v     v     v     NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--~~~~~~~->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUG*[ 10]*CCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 :G GGG:G G:G GUG GUGUG::UG:G G GUG       CC C C:CA::CACAC CCC:C C:CCC C:C 
    chr10 143329 UGCGGGUGGGCGGGUGGGUGUGUGUGUGUGUGUG*[101]*CCCCCCACACACACACACCCGCACACCCACACA 143496
                 *************998888888888888888877....*..68899999999999999**************** PP

>>

RNAfold
>chr10_13
GCGGGUGGGCGGGUGGGUGUGUGUGUGUGUGUGUGUGUUCCGUCCUGACC
AGAAAACAAAAAAAGGCACGUCAAUGAAAAGUGCGCCGUUAACUCACCGC
AUCACCUGGCAGGGGCCUCCCCCCCCCCCCCCCCCCCCCCACACACACAC
ACCCGCACACCCACACA
((......))..(((((((((((.(((((((((((((...((((((.................))).)))..........(((((..(......)..))))).....((..((((......))))..))..........))))))))))))).)))))))))))... (-63.80)

Length sequence

: 167

Length match:

166