chr10_15

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

51.4

E-value:

2.1e-06

From sequence:

328773

To sequence:

328880

Alignments:

                   v          v                                                   v         v     NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--<<__~~~~~~>>-->>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUGuCGC*[ 3]*GgUCCaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 :GCG:GCGU:UG  UGUGUGUG::UG:G:GUG G:CGC      G:  CAC:C:CA::CACACAC CA:ACGC:C C:C+
    chr10 328773 AGCGAGCGUAUGUGUGUGUGUGUGUGUGUGUGAGACGC*[35]*GUCGCACACACACACACACACACAUACGCUC-CUCC 328880
                 **********************************9997...*..9999***************************.**** PP

>>

RNAfold
>chr10_15
GCGAGCGUAUGUGUGUGUGUGUGUGUGUGUGAGACGCCGACGCAUUGGGU
CGUGGCAGACCCCAGCAUCCUCGUCGCACACACACACACACACACAUACG
CUCCUCC
..((((((((((((((((((((((((((((..((((..((.((...(((((......)))))..)).))..)))))))))))))))))))))))))))))))).... (-71.30)

Length sequence

: 107

Length match:

106