chr10_16

cmsearch-Rfam

Family :

mir-574

Id:

RF00929

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00929

Description:

not description

Score:

45.3

E-value:

4.8e-05

From sequence:

328878

To sequence:

328771

Alignments:

                   v          v                                           v         v     NC
                 <<<<<<<<<<<<-<-<<<<<<<<<<<<<<<<<--~~~~~~>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>:: CS
  RF00929      1 cGcGGGCGuGuGAGUGuGuGuGuguGaGuGuGUG*[11]*CaCgCuCaugCaCaCaCCCaCaCGCCCgCgCu 77    
                 :G G:GCGU:UG  UGUGUGUG::UG:G:GUG G      CAC:C:CA::CACACAC+CA:ACGC:CGC:CU
    chr10 328878 AG-GAGCGUAUG--UGUGUGUGUGUGUGUGUGCG*[45]*CACACACACACACACACACAUACGCUCGCUCU 328771
                 **.*********..79999999999999999987...9..666677777777777778************** PP

>>

RNAfold
>chr10_16
GAGCGAGCGUAUGUGUGUGUGUGUGUGUGUGUGAGACGCCGACGCAUUGG
GUCGUGGCAGACCCCAGCAUCCUCGUCGCACACACACACACACACACAUA
CGCUCCU
.((.((((((((((((((((((((((((((((..((((..((.((...(((((......)))))..)).))..)))))))))))))))))))))))))))))))))) (-71.90)

Length sequence

: 107

Length match:

106