chr10_3

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

32.9

E-value:

0.0016

From sequence:

485938

To sequence:

485837

Alignments:

                                     v                                        v                    NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<~~~~~~>>->>>>>>>>>>-->>>->>>->>>>>::::::::: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUa*[95]*uAucguUCucaggugCUCCuuCCucuuCCUUuuaguU 170   
                  U AG  AGA:::A A:AGA AG+ :C:GAGAG::+:A      U:U::UUCUC:G:  CU C:U C:::UCC U U ++ 
    chr10 485938 CUCAGACAGAGAGAGAGAGACAGAGACAGAGAGGCACA*[28]*UGUGCUUCUCUGUGUCU-CUUUCUUCUCCCUCUCUCC 485837
                 ************************************97...*..799**************.99999************** PP

>>

RNAfold
>chr10_3
CUAGAAAUGUACUCCCACACACAGCGAAACAGGGGAGAGAGGGAGAAGAA
AGAGACACAGAGAAGCACAACCACACCCACAUCCACACACCUGAAUAUGU
GCCUCUCUGUCUCUGUCUCUCUCUCUCUGUCUGAGUCUUGUACACAUGGU
GAGGGACAUGCGCAGGGAA
.......((((.((((.(((.((((((.((.(((.(((((((((((.((.(((((((..((((.(((((............................))))).))))))))))).))))))))))))).)))..)).)))).....))))).))))..))))....... (-57.00)

Length sequence

: 169

Length match:

100