chr10_4

cmsearch-Rfam

Family :

mir-2968

Id:

RF02093

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035195 gene silencing by miRNA

Description:

not description

Score:

34.0

E-value:

0.0019

From sequence:

492570

To sequence:

492466

Alignments:

                   v   vv  vv  v                               v        v                               v  vv     NC
                 <<<<-<<<<-<<<<<<<<.-<<<<<-<<<<<<<<--<<<<<--<<<<<______>>>>>-->>>>>.->>>>>>>>->>>->>->>>>>>>>---> CS
  RF02093      1 gCugCCCugagagccGcu.guCCuCcaGGucgCccUgGCagCCcuCGuCGUuGAgCGaguUcuGCc.UgGcgaCCuUGgGcGacagCggcuugACc 94    
                 GC :C   :+  :C  C: GU:C:C :G::C:CC U:GCA:C CUC :C UUG : GAGU :UGC: UGG:G::C:UG:GC:AC:G  G:     :
    chr10 492570 GCUCCUCGCCAUCCAGCCgGUGCACACGAGCACCAUAGCAACACUCCUCUUUGCACGAGUGUUGCUaUGGUGCUCGUGUGCCACGGUAGGUG-UGG 492476
                 ***97655555555555548**********************************************88**************9766666554.444 PP

                 vv       v   NC
                 >>>----->>>> CS
  RF02093     95 aGGUCggucaGc 106   
                       GU: GC
    chr10 492475 GCG--CGUGUGC 492466
                 444..36799** PP

RNAfold
>chr10_4
GCACACGCGCCCACACCUACCGUGGCACACGAGCACCAUAGCAACACUCG
UGCAAAGAGGAGUGUUGCUAUGGUGCUCGUGUGCACCGGCUGGAUGGCGA
GGAGCU
((.(.(.((((....((..(((..(((((((((((((((((((((((((.(......).)))))))))))))))))))))))))..)))..))..)))).)).)). (-68.00)

Length sequence

: 106

Length match:

103