chr11_14

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

59.5

E-value:

1.6e-11

From sequence:

68743

To sequence:

68662

Alignments:

                                                                                                    NC
                (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..........,,<<<<<_______>>>>>))))))): CS
  RF00005     1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag..........gcgcgGGUUCgAaUCCcgcuaucucCa 71   
                G :GA:AU+G:::AGUGGU  A:::CGU:GGA+U A   UCC:A+           GCG:GGGUUC+AA CCC:CU:UC: CA
    chr11 68743 GGUGAGAUGGUCGAGUGGUcuAAGACGUUGGAUUAAGGUUCCAAU-ccuuucgaggGCGUGGGUUCAAACCCCACUCUCAUCA 68662
                *********************************************.*********74************************** PP

>>

RNAfold
>chr11_14
GAUGAGAGUGGGGUUUGAACCCACGCCCUCGAAAGGAUUGGAACCUUAAU
CCAACGUCUUAGACCACUCGACCAUCUCACC
((((.(((((((((.((....)).))))......(((((((....)))))))...(((...))))))))...))))..... (-19.80)

Length sequence

: 81

Length match:

80