chr11_4

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

20.9

E-value:

0.0065

From sequence:

256396

To sequence:

256285

Alignments:

                  v  v               v v                        v v            vv                           vv    NC
                 ((((((((((,,<<<<<<<-<<<-----<<<-~~~~~~>>>------>>>->>>>>>>,,,,<<__________________.________>>,,, CS
  RF02400    219 GGaGaagGaGguGcCaaGuAGCCCCGUUGCGG*[39]*CGCuUCCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCU.UCUCCcCcguacc 346   
                 G AG ::GAGG G:::AG:A :   G UG GG      C C+U CCC : C:CU:::C C C    CC   UCCC UUCCCU UCU C C GUACC
    chr11 256396 GAAGCGAGAGGAGGGGAGGAAA-AAGAUGUGG*[ 5]*CGCCUUCCCCUCCCCUCCCCGCCC--CUCCUUUUCCCUUUCCCUcUCUACUCUGUACC 256305
                 *******************865.478888776...8..778777777788999999998754..44555555555555554425556668899*** PP

                               v  v   NC
                 ,,,,,,,,,)))))))))-) CS
  RF02400    347 cccCuCUCUCuCuuuCuCGC 366   
                 CCCC+C C CUC:: CU GC
    chr11 256304 CCCCCCCCCCUCUCACUCGC 256285
                 ******************** PP

>>

RNAfold
>chr11_4
GCACCACCAGAUAUGUAGCAGCGUAAAAGGCAAAGAGGAAGAGCGUGAUC
GAGUGGCGUGUGUGCGAGUGUGCACCAAGGUCUCCGUCGAAGCUUUUCUC
UGCACUGGUGAUCUCUCUCCCCCUUUUUUCCCUUUGCCUCUCGGUGUGUG
UGUGUGUGUGUGUGUGUGUGGCCUGUAGGCGAGUGAGAGGGGGGGGGGGG
UACAGAGUAGAGAGGGAAAGGGAAAAGGAGGGGCGGGGAGGGGAGGGGAA
GGCGUUCGACCACAUCUUUUUCCUCCCCUCCUCUCGCUUCAUCGUUUCCU
UGUUAAGCUUCCUCGCAUUUGUGCUCUAUUGCGUGGGGUCUCUCGCUCUU
CCUCGCCUCUUUUUCUUGACCCUCUCUGCUGCCCUCUGAUGCGUGGGUAU
CGCGUGACAUGCGACUUUCUGCUUCGUGUAUGGGCGCUCUUUUCUUGCGU
UGCGCAGGCGGUUGCUCGA
(((((.((.....(((.(((((((((.((((...(((((((((((.((((((..(((.(..((((......))))..).)))....))))...((((((((((.(((...(((((((((((((((((((((((..(((.(.((.....................)).).)))....))).))).))))))))))))))))).))).)))))))))).(((((((...((((.(.((((((((((((((((((.((......))..)))))))))))))))))).).))))....))))))).....(((.((.((((............)))).))))).)).)))))))))))))))...................((.((((....(((((.(((((((((((...)))))).....))))))))))..)))))).......)))))))))))))).)).))).... (-183.80)

Length sequence

: 469

Length match:

110