chr11_6

cmsearch-Rfam

Family :

mir-214

Id:

RF00660

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00660

Description:

not description

Score:

31.7

E-value:

0.0011

From sequence:

234669

To sequence:

234764

Alignments:

                   v   v            vvvv                      v                           v                       NC
                 :<<___>>--------<<<<<<<<<<<<<<<<<<<<<<---<<<<<<<<<<<<_____________>>>>>>>>>>>>--->>>>>>>>>>>>>>> CS
  RF00660      1 gccauugguuGaaagaGcuGccguguguCuGCCuguCuACACuuGCuGugCaGAacaUCcuCuaaCCuGuaCaGCagGCACaGacaGGCaGacaca 96    
                 G:  + +: UG  AG GCUG+CG GUGU:UG :UGU:: C    G UGU:::GA CA  C C +ACC:::ACA C     C::ACA: CA:ACAC 
    chr11 234669 GU--AGAAGUGCCAGCGCUGACGUGUGUGUGUGUGUGCUCU---GAUGUGUGGAGCACACACACACCCACACACC-----CGCACACGCACACACG 234754
                 *5..567899****************************999...88***************************55.....8999998887766666 PP

                 vvvv           NC
                 >>>>>>>::::::: CS
  RF00660     97 cggCagCccauCuu 110   
                     AGC + + U+
    chr11 234755 ----AGCAUCAUUA 234764
                 ....********** PP

>>

RNAfold
>chr11_6
AGAGAAGUAGAAGUGCCAGCGCUGACGUGUGUGUGUGUGUGCUCUGAUGU
GUGGAGCACACACACACCCACACACCCGCACACGCACACACGAGCAUCAU
UAUGGUGGU
..............((((.((.((((.(((((((((((((((...(.(((((((.............))))))).).))))))))))))))).)..)))...)).)))) (-43.50)

Length sequence

: 109

Length match:

94