chr11_8

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

24.8

E-value:

0.0062

From sequence:

204679

To sequence:

204551

Alignments:

                                     v        vv  v  v                                                            NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________.________________________________>>----> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAc.aAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCC 95    
                 ++ U  U+A G     G GA+AG G::G:     AG ::GA:AUG::  U    A  A A+ G GAGA+ ++ A  +A++U U GUUGC::+C+C:
    chr11 204679 GGGUAUUUAGGGCGAUGUGAAAGGGGUGG-----AGAGGGAGAUGAGUGUGAAUAAgAGAGAGAGAGAGUUGCACCAAUCUUUCGUUGCCUUCACU 204589
                 **********999999***9777665554.....46667889***99555555444044568999************************8887776 PP

                    v  v  vv        v                      NC
                 >>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     96 CaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 C:: C C  C+:C::C CU GC C   +C +U++++ UU +
    chr11 204588 CCCCCUC--CUCCUCCUCU-GCACAACGCGUUUUCUGUUGC 204551
                 6554443..3555555555.********************* PP

>>

RNAfold
>chr11_8
UGAGCAACAGAAAACGCGUUGUGCAGAGGAGGAGGAGGGGGAGUGAAGGC
AACGAAAGAUUGGUGCAACUCUCUCUCUCUCUUAUUCACACUCAUCUCCC
UCUCCACCCCUUUCACAUCGCCCUAAAUACCCCUGC
...............(((.((((.(((((.((.((((((((((((((......((.(((..(......)..))).)).......))))).......))))))))).))))))))))).)))............... (-40.80)

Length sequence

: 136

Length match:

127