chr12_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

22.5

E-value:

0.0021

From sequence:

345179

To sequence:

345052

Alignments:

                                            v      v v          v  v     v                                        NC
                 (((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<~~~~~~>>>->>->>>->>>------>>>->>>>>>>,,,,<<______________ CS
  RF02400    222 GaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugug*[18]*cacugcCCuCCCGCuUCCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUU 329   
                 GA:: :   G:::::: G::  G UG   AGA U : UG      CA  : C UCC  C UC  C::C ::::::CAC C:CU C C CUCCC U 
    chr12 345179 GAGGGUGUGGGUGUUGGGGGGGGGUGUA-AGAGUGCAUG*[ 8]*CAACGACUUCCCGCGUCAGCCCCUCAACACCAC-CGCUUCUCGCUCCCUUA 345084
                 999999999***********99988887.9999999554...4..4566999************************98.7**************** PP

                                                   NC
                 ____________>>,,,,,,,,,,,,))))))) CS
  RF02400    330 CCCUUCUCCcCcguacccccCuCUCUCuCuuuC 362   
                 CCCUUC CC C G: CCCCCC+C C  : ::UC
    chr12 345083 CCCUUCCCCAC-GCCCCCCCCCCCCCUAUCCUC 345052
                 *****999887.**9999999999999999999 PP

>>

RNAfold
>chr12_1
CCCCCCUCUCUCUCUCUCUGUGCCUCUCUCAGUCGCUCGCAUCAGCGCUG
GGUCUUGGAGAGGUUUUAGGGACGACGUCGAAGACGAUGGAGAAUAUGAA
AUCUCUACGUGUCUGUGCGCACUACAUCUGCUCGGGAGACGAAGAGUAUA
AACUCCUCUAGAGGUGGAGAGAGGAUAGGGGGGGGGGGGGCGUGGGGAAG
GGUAAGGGAGCGAGAAGCGGUGGUGUUGAGGGGCUGACGCGGGAAGUCGU
UGUUGGAUUUCAUGCACUCUUACACCCCCCCCCAACACCCACACCCUCAU
GCGUGAAGGCGAGGCACAUACGCGCAACAACAACAAAGCUCAGGGAGUUU
AUAUACAUUCCUGGUUGGUCAUCUUCUCUCAGAGGACCCAAGGGAGGGGA
AGUGGAGGGGGAAAGAAAGCAGGAGAAAGCAACGGAGGCGCGCUGUGAAG
UGUCGUGAGAAGGAGAGCG
(((((((((.((.((((((.((((((((((((.((((......)))))))))......((((((((((....(..(((((....)))))..)....)))))))))).(((.(((.((.(((.......))).))))).)))..((((....))))....))))))).)))))))).)))))))))(((((.(((((...(((...(((.((.....))...(((((.(((((((........((((((.......))))))..)).))))))))))))).)))....))))).)))))...(.(....((((.((.(((((((((..(.......((((((...)))))).......((((((.((.....(((((((.((.....(((......)))....))))))))).....)).)))))).........)..))))).))))..)).))))....).)...... (-174.40)

Length sequence

: 469

Length match:

126