chr12_4

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

39.2

E-value:

9.1e-06

From sequence:

335522

To sequence:

335600

Alignments:

                                                                                           NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<.<-<<<~~~~~~>>>->->>>>>>>>>>>>>>>>>>--->>>>>:: CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCa.CACCu*[34]*aGGCGUuGuGggaaGggcgGcgacgauGaacgua 100   
                   C:::C  GU::CC::CCU:::CAC: CAC:U      A:G GU:GUG:::AGG::GG::AC+A G:::G+ 
    chr12 335522 GCCCCCCUUGUACCCAGCCUCACCACCaCACAU*[12]*AUGUGUGGUGGUGAGGCUGGGUACAAGGGGGGCC 335600
                 **************************9899988...8..889999**************************** PP

>>

RNAfold
>chr12_4
CUUCGCUGUGGCCCCCCUUGUACCCAGCCUCACCACCACACAUACGCCUA
CCUGCAUGUGUGGUGGUGAGGCUGGGUACAAGGGGGGCCAGAGUGUCUCU
...((((.(((((((((((((((((((((((((((((((((((..((......))))))))))))))))))))))))))))))))))))).))))..... (-88.50)

Length sequence

: 100

Length match:

77