chr12_5

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

39.0

E-value:

9.9e-06

From sequence:

335599

To sequence:

335521

Alignments:

                                                                                           NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<.<-<<<~~~~~~>>>->->>>>>>>>>>>>>>>>>>--->>>>>:: CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCa.CACCu*[34]*aGGCGUuGuGggaaGggcgGcgacgauGaacgua 100   
                   C:::C  GU::CC::CCU:::CAC: CAC:U      A:G GU:GUG:::AGG::GG::AC+A G:::G+ 
    chr12 335599 GCCCCCCUUGUACCCAGCCUCACCACCaCACAU*[12]*AUGUGUGGUGGUGAGGCUGGGUACAAGGGGGGCC 335521
                 **************************9888887...8..788899**************************** PP

>>

RNAfold
>chr12_5
CCUUCGCUGUGGCCCCCCUUGUACCCAGCCUCACCACCACACAUACGCCU
ACCUGCAUGUGUGGUGGUGAGGCUGGGUACAAGGGGGGCCAGAGUGUCUC
....((((.(((((((((((((((((((((((((((((((((((..((......))))))))))))))))))))))))))))))))))))).)))).... (-88.50)

Length sequence

: 100

Length match:

77