chr12_8

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.3

E-value:

0.0042

From sequence:

275727

To sequence:

275871

Alignments:

                                        v  v          v   v   vv                vv    v  v          v    v        NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<__________~~~~~~>>---->>>>>>->>>>>>->>>..>>>>->>> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAca*[31]*uCcCuCCCaUGCACUGCcUCuUC..CCuGGCUC 119   
                   + GG+G+ GA A GGAGA AG GA GAGGC GA   :G+   GG GCUA + A A        + UC C:    C GCCUC UC  +CU  CUC
    chr12 275727 UCACGGAGUCGAAAAGGAGAGAG-GAGGAGGCGGAGGAGGGGCGGGGGCUAAUUAGA*[41]*--UUUCACCACUCCUGCCUCGUCucUCUCUCUC 275854
                 **********************9.999*******99999988888999999988764...8....4444344444588999985551156666777 PP

                                   NC
                 ::::::::::::::::: CS
  RF00690    120 CuuucuCuccucuuUuu 136   
                  +UUCU+UCC+C UUU+
    chr12 275855 UCUUCUUUCCCCGUUUC 275871
                 7999************* PP

>>

RNAfold
>chr12_8
CACGGAGUCGAAAAGGAGAGAGGAGGAGGCGGAGGAGGGGCGGGGGCUAA
UUAGACACGCACACGCACCCAUGCGCGCUCGCAUAAAAAGCCACUCUUUC
ACCACUCCUGCCUCGUCUCUCUCUCUCUCUUCUUUCCCCGUUUC
.((((.(..(((.(((((((((((.((((((((((..(((.(((((((..(((....((..(.((((....)))).)..))..)))..)))).))).)))..).)))).))))).)).))))))).)).)))...).))))... (-57.00)

Length sequence

: 144

Length match:

143