chr12_9

cmsearch-Rfam

Family :

mir-876

Id:

RF00935

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00935

Description:

not description

Score:

42.3

E-value:

4.2e-06

From sequence:

335520

To sequence:

335601

Alignments:

                                                                                           NC
                 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<___~~~~~~>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> CS
  RF00935      1 ugaaGugCuguGgauuuCucuGugaauCaCcaUAU*[14]*ugGuGguuuaCagaGuaauuCacaGugCuuca 81    
                 UG:::::C::UG:A::: :C: :::::C: CA AU      UG :G::::: :G: :::U:CA::G:::::CA
    chr12 335520 UGGCCCCCCUUGUACCCAGCCUCACCACCACACAU*[15]*UGUGGUGGUGAGGCUGGGUACAAGGGGGGCCA 335601
                 ***************99999999999998888876...8..88889999999999999*************** PP

RNAfold
>chr12_9
GGCCCCCCUUGUACCCAGCCUCACCACCACACAUACGCCUACCUGCAUGU
GUGGUGGUGAGGCUGGGUACAAGGGGGGCCA
((((((((((((((((((((((((((((((((((..((......)))))))))))))))))))))))))))))))))))). (-79.60)

Length sequence

: 81

Length match:

80