chr13_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

21.5

E-value:

0.0043

From sequence:

280379

To sequence:

280260

Alignments:

                                             v                v                                                   NC
                 (((((--((--(((((((((((,,<<<<<<<-<<~~~~~~>>->>>>>>>,,,,<<__________________________>>,,,,,,,,,,,, CS
  RF02400    207 aGGGCUCgGUGuGGaGaagGaGguGcCaaGuAGC*[59]*GCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCU 355   
                 AGG:  CGG   GG:G::GG:G  GC:A  :AGC      GC :  U:GC CUC     CCCC CCCC   CC  C CC CC  ACC  C U  CU
    chr13 280379 AGGCGACGG--GGGGGGGGGGGAAGCAAAGGAGC*[16]*GCACUCUUGCCCUC-----CCCCCCCCCCCACCACCACCACC--ACCAUCGUUCCU 280283
                 999999999..8899999999999*999999988...9..78888889999886.....55555555556666667777777..777777777788 PP

                                         NC
                 )))))))))-))--))--))))) CS
  RF02400    356 CuCuuuCuCGCaucCuCUGCCCu 378   
                 C:CU::C:C C  +CUCU :CCU
    chr13 280282 CCCUCUCUCUCUCUCUCUUGCCU 280260
                 88888888988889999999999 PP

>>

RNAfold
>chr13_1
CCCACAGGGAGGGAGGGAGGGAGGAAGAGGAAAGCGCAACGCGUCGUUGC
UGAGGCACAACCACAAGUCACACACACACACACACACACAUAUGCCCAAA
GGAUGAUUAGCAUUAGCUCCAGUAAAGAGGCACAGCCCAUACAGUGAGGC
CAUCGAGAGCAGGCGGAGGCUCUCAGGCAAGAGAGAGAGAGAGAGGGAGG
AACGAUGGUGGUGGUGGUGGUGGGGGGGGGGGGAGGGCAAGAGUGCGCCA
UACACUACACCGGCUCCUUUGCUUCCCCCCCCCCCCCGUCGCCUUUCCCG
UGAACCUACAAAUUUAUCGCCAUGUACCCACCGCGGCUAUUUCGUACCCA
ACCGGUUCUUUUCCACAGGGCUGGGAGGGGGGGGGGUUCCCCGCUUCACG
CCUUGGGAAGCUUCGUCUCCAUGACCGGGGCGAGGGUGACAAGAUCGGCC
AGCACCCACUUGUACGACU
(((.......))).((..((((((..((((.....((((((...))))))((.((((...................................))))))...((((.....))))..((((.(((..(.(((...)))).))).).)))(((...((((((........)))))).)))..........(((((.((..((.((((.((((((.((((((((((((((((((((.(((((.(((.(.(((............))).))))))))).)))))))))))))((((.......))))...((((............)))).))))))).)))))))))).))...))..)))))((((.((((((..((((.(((((....))))).))))..)))))))))).)))).))))).)..))(((((..((.(((.....))).)).)).)))............ (-170.84)

Length sequence

: 469

Length match:

118