chr13_15

cmsearch-Rfam

Family :

SCARNA2

Id:

RF01268

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01268

Description:

not description

Score:

27.1

E-value:

0.00081

From sequence:

55133

To sequence:

55025

Alignments:

                                                                                 v                      v          NC
                (((((<<<<<<__.___>>>>>>,.,,,,,,,,,,,,,,,<-<<<<____>>>>->,,<<<--<<<<<-<<____________>>->>>>>-.->>>, CS
  RF01268    52 ggcgccgcGcGgA.AGGCgCgugu.agggcgagUGuGaGUgggcgcGuGagcgcGuGaGuguGcgcgcgcgGaGCgUGcaAGgcgAgcgcgU.GcgCC 146  
                GG:G::::::: A A  ::::::U  G G+G GUGUG+GUG+::::GUG+::::GUG+GUGUG:G GC   G G GUGC  G    GC C:U GCGCC
    chr13 55133 GGGGAUAUAUAUAuAUAUAUAUAUgUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGC-GUGCGUGUGCGUGUGUGGCUCGUcGCGCC 55037
                ***********661334444444433445556666666666666667777777777777778888888.68888889999999999*****648**** PP

                             NC
                ,,,,,,,))))) CS
  RF01268   147 CgCCCcUgcgcc 158  
                C+CC C :C:CC
    chr13 55036 CUCCACCUCCCC 55025
                ************ PP

>>

RNAfold
>chr13_15
CGAGCGGGAGGGGUGCGGGCGUGUGUGUGUCGCGACAUAAACACAGAAAA
GAGGGGGGAGCAAAAGCGAUGCGAGGCAGUCAGGAGUCAAACAGACGCGG
UGAAGAGGAGAGGAAAGAGGCGCCCCGAUGUACGCAAGAUGAGAAGAAUC
GAUGGGGGGAGGUGGAGGGCGCGACGAGCCACACACGCACACGCACGCAC
ACACACACACACACACACACACACACACACACACACACACAUAUAUAUAU
AUAUAUAUAUCCCCGCAUCGCGAGUCGGCAAGAGGAAGGAAAAGGCGAGA
AGAAAGAGAAGACCAAUGCUGUAUGAUGAAUCCCCUUUCCUCGCUUAGCC
AAAUAAACGUUUGCGCGGGCGUGGGAAAAGAGGGGAAAGGGGAAGUGAAG
GGGGCGCAAGCAACAGUGCC
((((((((....(((((.(((((((((((((((................................))))(((...))).(((...(((.....)))....)))........((...(..(((((((.((.(.(.(..(.(((......))).)..).).).)).).))))))..)...))...))))))))))).)))))........................................((((((((....)))))))).))))).)))((.(((((((...((..........(.....)..........))..))))).))..))..((((((((((((.(((..((.......(((....)))......))..))).)))))))))))).........(((((........))))) (-115.34)

Length sequence

: 420

Length match:

107