chr13_3

cmsearch-Rfam

Family :

mir-253

Id:

RF01064

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01064

Description:

not description

Score:

28.3

E-value:

0.01

From sequence:

343390

To sequence:

343485

Alignments:

                          vvv  v   vvv                 v   v            v    v                  vvv   v  vvv      NC
                 ::<<<<<--<<<<<<<<<<<<<<<<<<<-<<<-<<<<<<<<<<____________>>>->>>>>.>>>>>->->>>>>>>>>>>>>>>>>>--->> CS
  RF01064      1 aUcguuCgagucgCcgccCuucuCaCaCACCucaCuaaCaCuaAccaCaGAUuuauaGAuGuua.GuaGGCGUuGuGggaaGggcgGcgacgauGa 95    
                   C::::      C ::C   CUC:C:C CC:CAC::: :C: ACCA AG  + A :GA: ::: GU:GG G :G:GGG   G:: G G + A ::
    chr13 343390 CCCACGUCU---UCGCUCGCCCUCCCCCUCCCCACCUCGUCCAACCAAAGGCGGAAGGAAAGAGgGUGGGUGGGGGGGG--GGGGAGGGGACAAAC 343480
                 *****9743...3444455555666666789999999999999************999999986268888765444444..444555556667789 PP

                       NC
                 >>>:: CS
  RF01064     96 acgua 100   
                 ::G+A
    chr13 343481 GUGCA 343485
                 ***** PP

RNAfold
>chr13_3
ACCCACGUCUUCGCUCGCCCUCCCCCUCCCCACCUCGUCCAACCAAAGGC
GGAAGGAAAGAGGGUGGGUGGGGGGGGGGGGAGGGGACAAACGUGCAGG
...(((((.(((.(((.((((((((((.((((((((.(((..((......))..)))..)).)))))).)))))))))).))).)))...))))).... (-59.10)

Length sequence

: 99

Length match:

94