chr13_8

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

32.6

E-value:

2.5e-05

From sequence:

350594

To sequence:

350729

Alignments:

                                     v                                                                            NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<..-<<<<<.-<---<<_______________________________________~~~~~>> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG..aGCAuG.aGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUu*[2]*uC 90    
                 +A    +GA + GA +GAGA :G:G: GAGG AG  +G ::G AGA GGAG  AU AA         A+AA+++  UG + UUGUU+U      UC
    chr13 350594 GAGCCCAGAGA-GAAAGAGA-GGAGGGGAGGAAGgcUGAGAGgAGAAGGAGAGAUGAAG-------CAAAAGUGUCUGCUGUUGUUUUC*[7]*UC 350682
                 ***99999876.8888***5.***************88888878999999999999998.......48888899999999999999885..4..33 PP

                                          v                      NC
                 --.-->>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     91 cC.uCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                    + CC:: C CU CCUC :C:C:+GCUCC+  +U+ C+U+U UU 
    chr13 350683 AGgAUCCUCUCGCUUCCUCUCCUCCUGCUCCCCCUUUCCUUUUGUUG 350729
                 221346999999*********************************** PP

>>

RNAfold
>chr13_8
AGCCCAGAGAGAAAGAGAGGAGGGGAGGAAGGCUGAGAGGAGAAGGAGAG
AUGAAGCAAAAGUGUCUGCUGUUGUUUUCCCCCAUCUCAGGAUCCUCUCG
CUUCCUCUCCUCCUGCUCCCCCUUUCCUUUUGUUG
......(((((...(((((((((((((((((.(.(((((((....((((...(((((((.(((....))).)))))))......))))....)))))))))))))))))))))).)))...)))))......... (-58.70)

Length sequence

: 135

Length match:

134