chr13_9

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

24.6

E-value:

0.007

From sequence:

350721

To sequence:

350598

Alignments:

                                                    vvvv                                                          NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_.________________________________________>>----> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaG.CUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCC 95    
                 +++  G G  +  A+G::GA AGG:A: ::G :GA+C   AGAUGG:G   A CAAC           A+ AGA   ++UUG U+   C:C+  CC
    chr13 350721 GGAAAGGGGGAGCAGGAGGAGAGGAAGCGAGAGGAUCCUGAGAUGGGGgAAAACAAC-----------AGCAGACACUUUUGCUUCAUCUCU--CC 350639
                 ***************************955555544444599999665044444444...........444445556677777777666665..44 PP

                   vvvv                                       NC
                 .>>>>>->>>>>>..->>>>>>>->>>::::::::::::::::: CS
  RF00690     96 .CaUGCACUGCcU..CuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                        C: C::  C:U:CCU  C::C+U +++U+CUCU+U  
    chr13 350638 uUCU---CCUCUCagCCUUCCUCCCCUCCUCUCUUUCUCUCUGG 350598
                 2444...555555459**************************** PP

>>

RNAfold
>chr13_9
UGAGCCCAGAGAGAAAGAGAGGAGGGGAGGAAGGCUGAGAGGAGAAGGAG
AGAUGAAGCAAAAGUGUCUGCUGUUGUUUUCCCCCAUCUCAGGAUCCUCU
CGCUUCCUCUCCUCCUGCUCCCCCUUUCCUUUUGU
........(((((...(((((((((((((((((.(.(((((((....((((...(((((((.(((....))).)))))))......))))....)))))))))))))))))))))).)))...)))))....... (-58.70)

Length sequence

: 135

Length match:

122