chr14_1

cmsearch-Rfam

Family :

IRES_Bip

Id:

RF00223

Type:

Cis-reg; IRES;

Taxonomy:

Eukaryota;

Ontology:

GO:0043022 ribosome binding

Description:

This family represents the bip internal ribosome entry site (IRES). BiP protein expression has been found
to be significantly enhanced by the heat shock response due to IRES-dependent translation. It is
thought that this translational mechanism is essential for the survival of cells under stress [1].

Score:

24.2

E-value:

0.00038

From sequence:

280263

To sequence:

280204

Alignments:

                                                                          NC
                 :::((((((,,,,,~~~~~~~,,,,,,,,,,,,,,,,,,))))))::::::::::: CS
  RF00223      1 cgCcgGCcaAGACa*[214]*AGAUGAAGCUCUCCcUGGugGCcgCGaUGCUGCUG 263   
                 C  C:GC::AG C        AG  GAAGC C  C UGG::GC:GCG UGCUGC G
    chr14 280263 CCGCUGCUGAGCCC*[ 11]*AGGCGAAGCGCCUCAUGGUGGCAGCGUUGCUGCAG 280204
                 **************....9..56679****************************** PP

>>

RNAfold
>chr14_1
CCCCCGGCAUGUGCGCGAUCCCUUUCGUUGCUCCUUUUCUCCUCUGCUAC
UUCCUGUUCCAUGACAAGUAUGAGCUGAGUCAACCACGGCAGCACCCAGC
GCUGCAGCAACGCUGCCACCAUGAGGCGCUUCGCCUCAGUGACGAAAGGG
CUCAGCAGCGGACUCUCCACGGCAACGCCGCUGCGCACCCGUAUCACACG
CACCACUGAUAUCUUUGACCCCCACGAGGCGAUGUCGACGUCCCUCUCGG
GCAGAAGCGGCGA
...(((....((.(((((.((((((((((((..........(((.(((....(.((((....)))).)....))).)))........((((((.....((......))...))))))....(((((((...))))))))))))))))))).))....))).))......)))...(((((((........((((((..........)))))).((((.(((....((((.((((....))))))))..)))))))))))))). (-88.80)

Length sequence

: 263

Length match:

58