chr14_10

cmsearch-Rfam

Family :

mir-609

Id:

RF01001

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01001

Description:

not description

Score:

29.5

E-value:

0.0064

From sequence:

223802

To sequence:

223707

Alignments:

                     v                    v   vvv                               vvv   v                     v     NC
                 ::<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<____________________>>>>...>>>>>>>>>>>>>>>>>>>>.>>>>>>>>>>:: CS
  RF01001      1 UGCuCuGCuguuCCuaGGguGuugCcCuCauCuCugGUcUAUAAUGGGuUAAAUAGcaGa...GauGaGgGcaaCacCCuaGG.aacaGCaGaGGA 92    
                 U C: U:C::::C :::::::U::C CUC   :CU:  CUA A  GGG  A   A :AG:   GA+GAG G::A::::::: G ::::G:A :GG 
    chr14 223802 UCCCCUCCCCCCCUCCCUCCCUCACCCUC---CCUCACCUAAAGAGGGAAAGUGACGAGGucgGAAGAGAGUGAGGGAGGGGGgGGGGGGAAGGGC 223710
                 **************999999999999998...888888898888888888887777888754456699999999999987765156678999**** PP

                     NC
                 ::: CS
  RF01001     93 Acc 95    
                 ACC
    chr14 223709 ACC 223707
                 *** PP

RNAfold
>chr14_10
GUGCCCUUCCCCCCCCCCCCUCCCUCACUCUCUUCCGACCUCGUCACUUU
CCCUCUUUAGGUGAGGGAGGGUGAGGGAGGGAGGGGGGGAGGGGA
...((((((((((((..(((((((((((((((((.........((((((.........))))))))))))))))))))))).)))))))))))). (-65.90)

Length sequence

: 95

Length match:

94