chr14_2

cmsearch-Rfam

Family :

mir-156

Id:

RF00073

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035195 gene silencing by miRNARF00073

Description:

This family represents the plant microRNA (miRNA) precursor mir-156. This miRNA has now been predicted or
experimentally confirmed in a range of plant species (MIPF:MIPF0000008). Animal miRNAs are transcribed as ~70nt
precursors and subsequently processed by the Dicer enzyme to give a ~22nt product. In plants
the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be
involved in processing. In this case the mature sequence comes from the 5' arm of
the precursor, and both Arabidopsis and rice genomes contain a number of related miRNA precursors
which give rise to almost identical mature sequences. The extents of the hairpin precursors are
not generally known and are estimated based on hairpin prediction. The products are thought to
have regulatory roles through complementarity to mRNA.

Score:

32.8

E-value:

0.00078

From sequence:

422520

To sequence:

422464

Alignments:

                 v                                                          v NC
                 <<<<<<<<<.<<<<<<<<<<<<-<<<__~~~~~~>>>->>>>>>>>>>>>->>>>>>>>> CS
  RF00073      1 guGACaGaa.GAGaGUGAGCACACacgG*[35]*guGcGUGCUCACuCUCUuuCuGUCac 88    
                  :GA AGA: GA AG G:GCA ACA:+       :UG  UGC:C CU UCU:UCU UC: 
    chr14 422520 CAGAGAGACaGACAGAGCGCAGACAAAA*[ 3]*UUGGCUGCGCUCUGUCUGUCUCUCUC 422464
                 *************************986...6..9************************* PP

RNAfold
>chr14_2
AGGGAGAGACAGACAGAGAGAGACAGACAGAGCGCAGCCAACUCUUUUGU
CUGCGCUCUGUCUGUCUCUCUGUCCCUUCCUCCCGCCC
.(((((.((.((..(.(((((((((((((((((((((.(((.....))).))))))))))))))))))))).)..))))))))).... (-56.00)

Length sequence

: 88

Length match:

55