chr14_4

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

40.7

E-value:

2e-05

From sequence:

422438

To sequence:

422549

Alignments:

                                     v     v                                                   v     v            NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<~~~~~~>-->>>>>>>>>>>->>>>>>>>>>-->>>->>>-....>> CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaAC*[72]*GCCuCCCAUuCCuAucguUCucaggugCUCCuuCC....uc 158   
                 G  AG  AGA::: GA:AGA AG++: :GAGA:::+ A ::A :G A C      G CU C: U:: U U:::UCUC: :  CU C:UCC    ::
    chr14 422438 GACAGACAGACAGGGAGAGACAGACAGAGAGAGACAGACAGAGCGCAGC*[10]*GUCUGCGCUCUGUCUGUCUCUCUGUCCCUUCCUCCcgccCU 422537
                 ***********************************************98...9..899******************************987888** PP

                              NC
                 >>>::::::::: CS
  RF01911    159 uuCCUUuuaguU 170   
                 :UCCU UU+ UU
    chr14 422538 GUCCUGUUGCUU 422549
                 ************ PP

>>

RNAfold
>chr14_4
UUGGGGUGGUCUGUACAGACUACUCCUAGACAGACAGACAGGGAGAGACA
GACAGAGAGAGACAGACAGAGCGCAGCCAACUCUUUUGUCUGCGCUCUGU
CUGUCUCUCUGUCCCUUCCUCCCGCCCUGUCCUGUUGCUUUCUUCAUGUG
AUGUCCCUUCACCAGGUGC
..((((((((((....))))))))))..(((((((((...(((((.((.((..(.(((((((((((((((((((((.(((.....))).))))))))))))))))))))).)..)))))))))...)))).)))))........(((.((.((......)).)).))). (-85.80)

Length sequence

: 169

Length match:

110