chr14_6

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

27.6

E-value:

0.00083

From sequence:

171810

To sequence:

172009

Alignments:

                                       v               v                                                          NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_____________.................................... CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAau.................................... 60    
                 AA+ GG+GA +  A++ AGACA      AG  AG G : G :A GGAG  A   A AAA+                                    
    chr14 171810 AAAAGGAGAAA-AAGAUAGACAA-----AGCGAGGGAGUG-GAAGGAGACACACAAAAAGgaggaaaaacaacagucgcuugaguguccaucccuu 171898
                 ********998.6777*****96.....555555555555.7777999999888888888678888888888888888888888888888888888 PP

                                                                                v               v                 NC
                 ...........................................______~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>:::::::::: CS
  RF00690     61 ...........................................ugUGAg*[22]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCucc 129   
                                                            UGUGAG      UC+CUC:C : C CU  CU      UG CU   U++ CUC+
    chr14 171899 cguuuacuaaaacacaaggaaauuacugucuuaguacccuuucUGUGAG*[19]*UCUCUCUCCCUCUCUCGCU-----GUGUCUAUGUGUGCUCU 172002
                 8888877777777777777777777777777777777777744333333...3..4555555555555555555.....59*************** PP

                         NC
                 ::::::: CS
  RF00690    130 ucuuUuu 136   
                 U+UUU U
    chr14 172003 UUUUUGU 172009
                 ******* PP

>>

RNAfold
>chr14_6
AAAGGAGAAAAAGAUAGACAAAGCGAGGGAGUGGAAGGAGACACACAAAA
AGGAGGAAAAACAACAGUCGCUUGAGUGUCCAUCCCUUCGUUUACUAAAA
CACAAGGAAAUUACUGUCUUAGUACCCUUUCUGUGAGUGUGCGUGUGCUG
UCUCUCUCUCUCUCCCUCUCUCGCUGUGUCUAUGUGUGCUCUUUUUUGU
(((((((....(.(((((((.((((((((((.(((((((((((((((....((((((.......((.((....)).))))).)))...(((.((((....((((.((((..(((((...)))))...)))))))))))).))))))).)))))).)).....))))))))))))).))))))).)...))))))).... (-67.80)

Length sequence

: 199

Length match:

198