chr14_8

cmsearch-Rfam

Family :

mir-558

Id:

RF01021

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01021

Description:

not description

Score:

30.5

E-value:

0.0029

From sequence:

180457

To sequence:

180358

Alignments:

                                         vvvv          vv       vv          vvvv                  NC
                 ::::::::<<-<<<-<<<<<<-<<<<<<<<<<<<<<<<<<-~~~~~~>>>>>>>>>>>>>>>>>>>>>>>>->>>->>:: CS
  RF01021      1 gUGUGUGUGcGcguguGuGguUauuuuGGuacaGcaGCuCU*[20]*GaGCugCuguaCCaaaauacCaCaAacgGgCUG 94    
                 GUGUGUGUG:G:GUGUGUG :U::  U+GU:::G::G:U+         :C::C:::AC    ::: CACA AC: :CU 
    chr14 180457 GUGUGUGUGUGUGUGUGUGUGUUGGGUUGUGUGGGUGUUUC*[31]*--ACACCCACAC---GCACGCACACACACACUC 180358
                 ************************99877777777776443...7....5666666666...59**************** PP

>>

RNAfold
>chr14_8
AGUGUGUGUGUGCGUGCGUGUGGGUGUGUUUCACAAGGAAAGCAAAGAGA
UGCACGCAGAAACACCCACACAACCCAACACACACACACACACACACAC
.(((((((((((.(((.(((((((((((((((.....(...(((......))).)...))))))).......)))).)))).))).))))))))))).. (-42.50)

Length sequence

: 99

Length match:

98