chr15_2

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

22.5

E-value:

0.002

From sequence:

429362

To sequence:

429255

Alignments:

                                                                                   vv                          vv NC
                 (--(((((((((((,,<<<<<<<-<<<-----<<<-~~~~~~>>>------>>>->>>>>>>,,,,<<__________________________>> CS
  RF02400    215 GUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGG*[39]*CGCuUCCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCcCcgu 343   
                 G  :GG:G:A:G:G  G:::AG:AG   C UUG:GG      C:CUU C C  CC:CU:::C CU     C   C   CC UCCC UC CC C  U
    chr15 429362 GGAGGGGGGAGGGG--GAGGAGAAG---CAUUGUGG*[ 1]*CACUUGCUC--CCUCUCCUCGCUU---UCAAGCAUUCCCUCCCCUCGCCUCUCU 429282
                 9999********99..999999999...88999996...7..999999999..9999999999985...233333333444455555666666667 PP

                                             NC
                 ,,,,,,,,,,,,)))))))))-))--) CS
  RF02400    344 acccccCuCUCUCuCuuuCuCGCaucC 370   
                  +CCC+C+C CUC:C:U:C:C C: CC
    chr15 429281 CUCCCUCCCGCUCUCCUCCCCACCCCC 429255
                 888888888999************999 PP

>>

RNAfold
>chr15_2
ACGUGCGUUGCUCAGAGGAGGUGGUGGGAAGGGGGGAGGGUUGGCGGAUG
UGAGAGUGGGGGGGGGGGGAGAGUACAGCAAAGACACUUUUGGAGGCGAU
AGGCAUGCCUCUAGAGGUGUGUGGCUGUGUCCACCAAAUCGCCCUUGGUA
UGAUUAAGGGAGGAGGAGGUGAUAACUUCCGGGGGUGGGGAGGAGAGCGG
GAGGGAGAGAGAGGCGAGGGGAGGGAAUGCUUGAAAGCGAGGAGAGGGAG
CAAGUGGCCACAAUGCUUCUCCUCCCCCUCCCCCCUCCACUUCGCUGUUU
UCCCUUGUACUCGAUGUGCCUCCCAAACGCGUCUGCCUCGUCCUUCCCCC
UCUUUUCCUUAGACCUCACCACUGCCGCCCGCCGUUACCGAGUCAUCUGG
CACGCCUUCCCUGGCACCGACCGCGCCGCCCAUCACGGGAGGCUGAUGCA
UACAAGACAAGCGAACACA
..(((((((.(((....)))(((((.((....(((((((((((.(((((((..(.((((.((.(((.((.((.((((((..(.(((((((((((((((.......))))))))))))))).).)))))))).......((.((((((((...))))))))..))((((((....))))))((((.((((((((((((.(((((((((((((.(((((((((((((..((((....)))).((((.(((((..((.(((......))).)).))))).)))).)))))).))))))).)))))....(((...((((((.........)))))))))....)))))))).))))))))))))..)))).......)).))).)).)))))..).)))))).)).)))))))))....)).)))))(((.(((.....))).))).))))))).................. (-213.80)

Length sequence

: 469

Length match:

106