chr15_4

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

29.5

E-value:

0.00022

From sequence:

410586

To sequence:

410459

Alignments:

                                     vv   v            v                                                          NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________________>>---->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCC 96    
                  ++    G UGAGA+ G:G + GGG : :G:C:G GCA G GAUGG:GCU    A AA++ GUG G ++         + GU GU+ C:C+ + CC
    chr15 410586 UGAGCACGCUGAGAGUGGG-UGGGGAGCGGACGG-GCAAGCGAUGGCGCUGCAGAGAAGGAGUGCGUGG------CGGCAGUGGUGUCGCUAAUCC 410499
                 *******************.89999999999999.*********************9999888877776......4456666788889******** PP

                 v               v   vv                      NC
                 >>>>-...>>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     97 aUGCA...CUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                  UGC    C:G:C:C: CCC   C:C ++ CUCUCCU+ +UU+
    chr15 410498 CUGCCgcuCCGCCCCCCCCC---CCCACACCUCUCCUUGCUUC 410459
                 ***94777999999887777...9999**************** PP

>>

RNAfold
>chr15_4
AGAGAAGCAAGGAGAGGUGUGGGGGGGGGGGGCGGAGCGGCAGGGAUUAG
CGACACCACUGCCGCCACGCACUCCUUCUCUGCAGCGCCAUCGCUUGCCC
GUCCGCUCCCCACCCACUCUCAGCGUGCUCAUCAU
.((..((((.(..((((.(((((((((((((((((.(((((((((..........)).)))))))................((((((....))).))))))))).)))))).)))))))))..).))))..)).. (-65.30)

Length sequence

: 135

Length match:

126