chr15_5

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

24.6

E-value:

0.0071

From sequence:

492031

To sequence:

491822

Alignments:

                                          v             v                                                         NC
                 ::::::::::::::::<<<-<<<<<<<.-<<<<<<-<<<<<.-<---.<<_____________................................. CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAa.gAgGCAGaGCAuG.aGAUG.GaGCUaucAAcaAau................................. 60    
                  AU   +   +AG ++GAGA AGGG+: GA G :GAG A G +GA G  :GC AU+  ++  +                                 
    chr15 492031 CAUAAAACGCAAGCGAGAGAGAGGGUGuGAGGAGGAGGAGGaGGAGGaGGGCCAUUUUUGCUGgcauagaaacguuggcagacgcacaaaaaacaa 491936
                 *************************76589999999999996566666677777777776555999999999999999999999999999999999 PP

                                                                                              v            v      NC
                 .........................................____________________________>>---->>>>>>->>>>>>->>>>>>> CS
  RF00690     61 .........................................ugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCCaUGCACUGCcUCuUCCCuG 115   
                                                          ++UGA+ A+ ++A  G+   GU +U+ C: C +CCC U C C: C UC: CCCU 
    chr15 491935 uaaccucacuuccccaacggaggugcacgcgcugcuguaugGCUGAAGAGGUAA--GUGGGGUCUUGUCCUCGACCCGUCCUCCUCUUCC-CCCUC 491843
                 999999999999999999999999999999999999988885555544443333..444445555555566669**************94.9**** PP

                                       NC
                 ->>>::::::::::::::::: CS
  RF00690    116 GCUCCuuucuCuccucuuUuu 136   
                  CUC +U +UCU+CU+ UU U
    chr15 491842 UCUCUCUCUUCUUCUUCUUCU 491822
                 ********************* PP

>>

RNAfold
>chr15_5
GAAGAAGAAGAAGAGAGAGAGAGGGGGAAGAGGAGGACGGGUCGAGGACA
AGACCCCACUUACCUCUUCAGCCAUACAGCAGCGCGUGCACCUCCGUUGG
GGAAGUGAGGUUAUUGUUUUUUGUGCGUCUGCCAACGUUUCUAUGCCAGC
AAAAAUGGCCCUCCUCCUCCUCCUCCUCCUCACACCCUCUCUCUCGCUUG
CGUUUUAUG
...((((...(((.((((((((((((((.((((((((.(((..((((((((((((.((((....((((((((......(((.....)))......)))))))))))).)))).)))).......((((......))))......((((.......))))))))..)))..)))))))).)).).))))))))))).)))...))))... (-79.50)

Length sequence

: 209

Length match:

208