chr16_1

cmsearch-Rfam

Family :

mir-194

Id:

RF00257

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035195 gene silencing by miRNARF00257

Description:

Expression of miR-194 has been verified in mouse (MIR:MI0000236, MIR:MI0000733) [1] and human (MIR:MI0000488, MIR:MI0000732) [2].
miR-194 appears to be a vertebrate specific miRNA and has now been predicted or experimentally
confirmed in a range of vertebrate species (MIPF:MIPF0000055). The hairpin precursors (represented here) are predicted
based on base pairing and cross-species conservation -- their extents are not known. In this
case the mature sequence is excised from the 5' arm of the hairpin.

Score:

32.3

E-value:

0.00029

From sequence:

474813

To sequence:

474892

Alignments:

                                                                                   NC
                 ::<<<<-<<<<<<--<<<<<<<<<-<<<<~~~~~~>>>>->>>>>>>>>-->>>>>>-->>>>:: CS
  RF00257      1 uuggugucacCgcaUGUAACAGCAACuCC*[26]*GGaGaUGCUGUUACuUgcGguggucaccaa 85    
                 + :G::UCAC:G:  G:A:CAGCA  : C      G :  UGCUG:U:C+ :C:GUGG+::C: +
    chr16 474813 ACCGGCUCACUGGUGGCAGCAGCAGUGGC*[21]*GCCGCUGCUGCUGCCACCAGUGGCGCCGCU 474892
                 ************************76655...7..55667************************* PP

>>

RNAfold
>chr16_1
GCACCGGCUCACUGGUGGCAGCAGCAGUGGCGAUGUUCUUAAAACGACUC
CAGCCGCUGCUGCUGCCACCAGUGGCGCCGCUUUC
....(((((((((((((((((((((((((((...(((........)))....))))))))))))))))))))))).))))..... (-59.80)

Length sequence

: 85

Length match:

78