chr16_2

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

32.0

E-value:

0.0028

From sequence:

266905

To sequence:

267031

Alignments:

                                           v     v v      v        v           v         v      v v     v         NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<<<-<-~~~~~~>->>>-->>>>>>>>>>>->>>>>>>>>>-->>>-> CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaACaUggA*[63]*cgAuGCCuCCCAUuCCuAucguUCucaggugCUCCu 153   
                 G  AG  A :AGA GA:AGAGAG  :  GAGA : G AGGAA     AC: +GA      C  :GCC      UCCU U : UCUC  :  CUCC:
    chr16 266905 GCGAGAGAGGAGA-GAGAGAGAGCGAAGGAGAAAGGGAGGAA-----ACGAAGA*[33]*CACCGCC------UCCUCUGUCUCUCUCUCUCUCCC 267015
                 ********99999.**************************84.....5666665...7..5566666......8********************** PP

                                   NC
                 >>->>>>>::::::::: CS
  RF01911    154 uCCucuuCCUUuuaguU 170   
                 UC UCU: C U U++ U
    chr16 267016 UC-UCUCUCCUGUGUGU 267031
                 **.99999********* PP

>>

RNAfold
>chr16_2
CCUUAUUCUGUUGCUGUGCUGGCGAGAGAGGAGAGAGAGAGAGCGAAGGA
GAAAGGGAGGAAACGAAGAAGAGAAAUCUGUGCCUUGACGCCGCCCUCCC
UCCACCGCCUCCUCUGUCUCUCUCUCUCUCCCUCUCUCUCCUGUGUGUCC
CAUCUGACUCGCUCUACCUU
....................((.((((((((((((((((((((((.(((((..(((((((...((..(..(((..........)))..)..)).))))))).......))))).)).)))))))))))).)))))))).)).(((.(((......))).)))........ (-65.10)

Length sequence

: 170

Length match:

125