chr16_3

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

30.1

E-value:

0.0081

From sequence:

267031

To sequence:

266905

Alignments:

                                           vv      v           v         vv        vv         v           v       NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<<<-<-<<<<<~~~~~~>>>>>>->>>-->>>>>>>>>>>->>>>>>> CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaACaUggAGGAAa*[53]*uUUCCcgAuGCCuCCCAUuCCuAucguUCuc 143   
                   +   A+GA:::AGA: GAGAG+ :  GAGAG: + AGGA  :G       :AG  A:      :   C:     C  C:  UCCU   :UUCUC
    chr16 267031 ACACACAGGAGAGAGAGGGAGAGAGA--GAGAGACAGAGGAGGCGGUG----GAGGGAG*[22]*C--UCU----UCUUCGUUUCCUCCCUUUCUC 266932
                 *****************988888665..999**********9999877....5555555...8..1..332....36789999************* PP

                 vv                          NC
                 >>>-->>>->>>->>>>>::::::::: CS
  RF01911    144 aggugCUCCuuCCucuuCCUUuuaguU 170   
                  +: GCUC :UC :::UCCU U +   
    chr16 266931 CUUCGCUCUCUCUCUCUCCUCUCUCGC 266905
                 *************************** PP

>>

RNAfold
>chr16_3
CCUUAUUCUGUUGCUGUGCUGGCGAGAGAGGAGAGAGAGAGAGCGAAGGA
GAAAGGGAGGAAACGAAGAAGAGAAAUCUGUGCCUUGACGCCGCCCUCCC
UCCACCGCCUCCUCUGUCUCUCUCUCUCUCCCUCUCUCUCCUGUGUGUCC
CAUCUGACUCGCUCUACCUU
....................((.((((((((((((((((((((((.(((((..(((((((...((..(..(((..........)))..)..)).))))))).......))))).)).)))))))))))).)))))))).)).(((.(((......))).)))........ (-65.10)

Length sequence

: 170

Length match:

125