chr16_6

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

24.9

E-value:

0.0055

From sequence:

266900

To sequence:

267022

Alignments:

                                       vv     v   v       v    v                                         v     v  NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________________>>---->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCC 96    
                  + UGG GA + GA+ GAGA A  GA:   GC: AG A:: +A GG G  A C A +AA    GAGAAA+   U G  UUG  G  GC C  UC :
    chr16 266900 UGCUGGCGAGA-GAG-GAGAGA--GAGAGAGCGAAGGAGA-AAGGGAGGAAACGAAGAA----GAGAAAUCUGU-GCCUUGACGCCGCCC--UC-C 266982
                 *******9988.444.565555..7777778888887766.232333333333333222....23333333222.233444444444444..44.8 PP

                      v   v     vv                        NC
                 >>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     97 aUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 :U CA :GC  C:UC+ U  CUC +U +++ CCUCU+U U
    chr16 266983 CUCCACCGCCUCCUCUGUCUCUCUCUCUCUCCCUCUCUCU 267022
                 899************************************* PP

>>

RNAfold
>chr16_6
UUGCUGUGCUGGCGAGAGAGGAGAGAGAGAGAGCGAAGGAGAAAGGGAGG
AAACGAAGAAGAGAAAUCUGUGCCUUGACGCCGCCCUCCCUCCACCGCCU
CCUCUGUCUCUCUCUCUCUCCCUCUCUCUCCUGUGU
.......((.((.((((((((((((((((((((((.(((((..(((((((...((..(..(((..........)))..)..)).))))))).......))))).)).)))))))))))).)))))))).)).)).. (-61.90)

Length sequence

: 136

Length match:

121