chr16_7

cmsearch-Rfam

Family :

mir-883

Id:

RF00909

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00909

Description:

not description

Score:

30.0

E-value:

0.0052

From sequence:

474810

To sequence:

474893

Alignments:

                        vv                       vv           vv                       vv         NC
                 :<<--<<<<<<<<<<<<<<--<<-<<<<<<<<<<_____~~~~~~>>>>>>>>>>->>-->>>>>>>>>>>>>>-->>:: CS
  RF00909      1 UGCAcugcaauaCuGaGaGaaGuAGCaGuuaCuuUaUaC*[ 3]*aaGuaaCuGCAaCAuCuCuCaGuauugcaAGGCUC 77    
                 UGCAC:G   :ACUG: :G AG:AGCAG ::C  U U+C        G:: CUGC :C  C: :CAGU:   C:  GCU 
    chr16 474810 UGCACCGGCUCACUGGUGGCAGCAGCAGUGGCGAUGUUC*[12]*CAGCCGCUGCUGCUGCCACCAGUGG--CGCCGCUU 474893
                 ********************************7776666...9..66*********************98..******** PP

RNAfold
>chr16_7
GCACCGGCUCACUGGUGGCAGCAGCAGUGGCGAUGUUCUUAAAACGACUC
CAGCCGCUGCUGCUGCCACCAGUGGCGCCGCUU
....(((((((((((((((((((((((((((...(((........)))....))))))))))))))))))))))).))))... (-59.80)

Length sequence

: 83

Length match:

82