chr17_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

23.3

E-value:

0.0012

From sequence:

415562

To sequence:

415888

Alignments:

                           v               v         v   vvv   v                v           vvv               v   NC
                 :{{{{,,,(((-(((~~~~~~~)))-))),,[[[[[[[[[[[[..[[[[[[[[-[[[[..-[[[[[[,,,,,,(((((--((--(((((((((((, CS
  RF02400      1 GCCggUAcGGCAGCg*[144]*uGCGGCCUCGuGuGGGauCGc..guCaggacUGaag..GaGaGCGAAuCuCaGGGCUCgGUGuGGaGaagGaGg 229   
                  CC:G A GG AG :       : C  CC  G:::G GA:+G+  G ::G::: G:AG  GA: :C:     CAG+++ C:G G:GGAGA::G GG
    chr17 415562 ACCGGAAAGGAAGUG*[  4]*CGCCACCCAGAAGGCGAGUGAgcGAAGGGGGAGGAGaaGAAAACACGAAACAGAAAACAGGGAGGAGAGGGCGG 415654
                 *********999887....7..677788999999988888666335555555656555444555566666678999999****************9 PP

                   v   v      v   v     v                             v             v                vvv          NC
                 ,<<<<<<~~~~~~>>>>>>,,,,<<________________________.__>>,,,,,,,,,,,,)))))))))-))--))--))))),,,,    CS
  RF02400    230 uGcCaaG*[67]*CuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCc.CcguacccccCuCUCUCuCuuuCuCGCaucCuCUGCCCuCuCA    382   
                  :  AA        UU  :   C  UA   C UCC CU  CCUUCUC    C   +CCC+CUC CUC C::UCUCGC: +C:CU   CUCUC 
    chr17 415655 GCGGAAA*[60]*CUUUAGCUGCUGUAGAUCUUCCUCUGUCCUUCUCUUuUCUUCUCCCUCUCCCUCUCCCUCUCGCUCUCUCU---CUCUCG    415798
                 8654443...8..34444555556666667777777777777777777744456667778888899999999999999999998...666654    PP

                          v             v    vvv    v                  v               v    NC
                 ~~~~~~]]]]]]]]]]-]]]]]]]]---]]]-]]]]]-]]]],,,,}}}}-<<<<<__.__________>>>>> CS
  RF02400    383 *[21]*CGCuCuuuuCCguccuGauUUugCGuguCCCAaCaCACAGccGGAuCGuuUU.UCUUcUCUCUaaCGa 470   
                       :G: :UUU:CC:::C:: U       :UC C :::C    C:GG   G  UU UC U+UC  U  C  
    chr17 415799 *[29]*UGUGUUUUCCCCCUCCUCU-------CUCUCUCUUCGUCUCUGGCUUGUUUUcUCAUUUCGUUGUCGG 415888
                 ...8..4444445555555555433.......78888899999999********99763677788889****** PP

>>

RNAfold
>chr17_1
AGACGACGAAACAAACAAGAGGCGCAACAAAGCGGAGGGAAGCGAUCAGA
GCAGGAAAGUCACCCGAGCCCACCGGAAAGGAAGUGUGCUCGCCACCCAG
AAGGCGAGUGAGCGAAGGGGGAGGAGAAGAAAACACGAAACAGAAAACAG
GGAGGAGAGGGCGGGCGGAAAAACAGCGCCCUCGUACGAGGCCACUUCCC
CCAUUUCUCUUUCUCUCGCUCUUUGGUGUUUCUUUAGCUGCUGUAGAUCU
UCCUCUGUCCUUCUCUUUUCUUCUCCCUCUCCCUCUCCCUCUCGCUCUCU
CUCUCUCGCUGUGCACACCCUCAUCUUGGCUUCUUUCUGUGUUUUCCCCC
UCCUCUCUCUCUCUUCGUCUCUGGCUUGUUUUCUCAUUUCGUUGUCGGUG
UUGUUUUUCGCUGUACAGCCUCGUUUCUUCUUCCUCUGGUUGCCUUCGCC
UCCCCCUCUCACACCCCACA
.................((((((((......)))(((((((((((((((((.(((((.(.....((((..((((((.((.((((((.(...((...(((((.((((((.(((...(((((((((((..(((((((((((..((((.((((.((((((((((((((.((....(((((((((((....)))).........................((((....))))........)).))))).(((........)))............................)).)))))))))))...))).))))......((.......)).))))))).))))))))...)))))))))))))))))))))))))...))...).)))))).)).)))))).........(((....)))))))...)))))).))))))))).)))).))))..)))))........... (-145.00)

Length sequence

: 470

Length match:

325