chr17_11

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.3

E-value:

0.0041

From sequence:

340558

To sequence:

340696

Alignments:

                                                vv   v         v             v         v   vv                     NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_______~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucA*[34]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuuc 124   
                 A+  G  GA G G   GAGAC:GGGA:G  G++G G ::G+:AUGG G U  +        C+CUC:C:: C C  C  C:UCCC:G CUC  + C
    chr17 340558 AGGCGCGGAGGUGCA-GAGACGGGGAGGGGGAUGGGUGGGGAAUGGUGGUGGUG*[40]*UCUCUCUCCCCCCC--CUUCCUCCCCGUCUCUAACC 340684
                 *********996665.***************99999999999999765554444...7..78888888888887..99****************** PP

                              NC
                 :::::::::::: CS
  RF00690    125 uCuccucuuUuu 136   
                  + +CU U+ U+
    chr17 340685 GUGUCUGUCCUC 340696
                 ************ PP

>>

RNAfold
>chr17_11
GGCGCGGAGGUGCAGAGACGGGGAGGGGGAUGGGUGGGGAAUGGUGGUGG
UGGUAAGUAUGUGUCCUCAGCUGACAGCAGACCACAUUCUCAUCUCUCUC
CCCCCCCUUCCUCCCCGUCUCUAACCGUGUCUGUCCUC
((.((((((((..((((((((((((((((..(((.(((((..(((((..(((((..((...((((.......))))))..)))))....)))))..))))))))..)))))))))))))))).)))...))))))).. (-69.90)

Length sequence

: 138

Length match:

137