chr17_12

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

26.6

E-value:

0.0017

From sequence:

340694

To sequence:

340556

Alignments:

                                             vv        v         v               v       v        vv              NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<..-<---<<_________~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuG..aGAUGGaGCUaucAAc*[32]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCC 120   
                 +++  G+ A G G+U+GAGAC:GGGA:GA+G :  G : G  AGAUG        AA+      U    CCC : CA : C  C:UCCC:G CUC 
    chr17 340694 GGACAGACACG-GUUAGAGACGGGGAGGAAGGGGGGGGAGagAGAUG------AGAAU*[45]*U---CCCCACCCAUCCC--CCUCCCCGUCUCU 340572
                 ***********.8888***********99998887777774455555......33433...8..3...3468888888777..9************ PP

                                  NC
                 :::::::::::::::: CS
  RF00690    121 uuucuCuccucuuUuu 136   
                    C++ C +  +U U
    chr17 340571 GCACCUCCGCGCCUCU 340556
                 **************** PP

>>

RNAfold
>chr17_12
GAGGCGCGGAGGUGCAGAGACGGGGAGGGGGAUGGGUGGGGAAUGGUGGU
GGUGGUAAGUAUGUGUCCUCAGCUGACAGCAGACCACAUUCUCAUCUCUC
UCCCCCCCCUUCCUCCCCGUCUCUAACCGUGUCUGUCC
.((((((((......((((((((((((((((..(((.(((((..(((((..(((((..((...((((.......))))))..)))))....)))))..))))))))..))))))))))))))))..)))))))).... (-71.30)

Length sequence

: 138

Length match:

137