chr17_14

cmsearch-Rfam

Family :

mir-639

Id:

RF01031

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01031

Description:

not description

Score:

36.7

E-value:

0.0025

From sequence:

166178

To sequence:

166275

Alignments:

                                   v vv         v          v      v           v       vv v                        NC
                 ::<<<--<<-<<<<<-<<<<<<<<----<-<<-<<<<<<<<<<______>>>>>>->>>>->>->-->>>>>>>>->>>>>->>>>>::::::::: CS
  RF01031      1 UGgccGgcgGgGCGCgCGcggCcgGGAGGGGcGgGgCggaCgcagAGCcgcGucuAGuCcagCGCaGcgGucgCGAGCGCcucgggcauCcugugc 96    
                  GG:CG :: G CG: :: G  :GG AGG G  G::C:G::G   AGCC C::C:AG::CA CGC GC:  C ::A:CG C ::G:C   C G   
    chr17 166178 CGGUCGCGUAGUCGGCGAAGUGGGGUAGGCGUCGAGCCGCUGACAAGCCACAGCGAGCUCAUCGCCGCCGUCGUCACCGACAACGACGGGCCGGCG 166273
                 ************************************************************************************************ PP

                    NC
                 :: CS
  RF01031     97 ug 98    
                 + 
    chr17 166274 AC 166275
                 ** PP

>>

RNAfold
>chr17_14
GGUCGCGUAGUCGGCGAAGUGGGGUAGGCGUCGAGCCGCUGACAAGCCAC
AGCGAGCUCAUCGCCGCCGUCGUCACCGACAACGACGGGCCGGCGAC
((((((((.(((((.((.....(((.((((..(((((((((........))))).))))..)))))))....)).))))).))).).))))...... (-46.90)

Length sequence

: 97

Length match:

96