chr17_15

cmsearch-Rfam

Family :

mir-788

Id:

RF02245

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF02245

Description:

not description

Score:

35.6

E-value:

0.00016

From sequence:

176304

To sequence:

176377

Alignments:

                                                   v          v                                  NC
                 :<<-<<<<<<-<<-<<<<<<--<<<<<<<-<<<<<__________>>>>>->>>>>>>>>>>>>->>-->>>>>>->>: CS
  RF02245      1 aCcuACuUuUCCGCUUCUaacuuCCAUUUGCAgAgUucAauaauUcUcUGaAAAUGGauuAGAAcCGuGAaAaGUUgGu 79    
                  C:U ::::U C C:UCU::  UCC::::GCA::   CA UA  U ::UG+::::GGA::AGA:  G GA::::  :G+
    chr17 176304 CCUUUUCGCUUCCCCUCUCC--UCCUCGCGCACGU--CAGUAUGUCCGUGGGCGAGGAGGAGAGGGGGGAGCGAG-AGA 176377
                 ***99999999999*****9..************9..***************************99999999986.*** PP

RNAfold
>chr17_15
CACCUUUUCGCUUCCCCUCUCCUCCUCGCGCACGUCAGUAUGUCCGUGGG
CGAGGAGGAGAGGGGGGAGCGAGAGACCG
....(((((((((((((((((((((((((.((((.((...))..)))).)))))))))))).))))))))))))).... (-55.90)

Length sequence

: 79

Length match:

72