chr17_16

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

60.6

E-value:

7.5e-12

From sequence:

296295

To sequence:

296224

Alignments:

                                                                                          NC
                 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaaggcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 ::: :::UA::::AGUGGU A::::+:C:G:CU++ A :C:G:+G+C:CGGGUUC+A UCCCG:::: :::+
    chr17 296295 UUCUCGGUAGUAUAGUGGUuAGUAUACCCGCCUGUCACGCGGGUGACCCGGGUUCAAUUCCCGGCCGGGAAG 296224
                 ****************9999**************************************************** PP

>>

RNAfold
>chr17_16
UUCCCGGCCGGGAAUUGAACCCGGGUCACCCGCGUGACAGGCGGGUAUAC
UAACCACUAUACUACCGAGAA
(((.((((((((.......)))))...((((((.......))))))..................))).))) (-23.20)

Length sequence

: 71

Length match:

70