chr17_18

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

52.1

E-value:

1.8e-09

From sequence:

296512

To sequence:

296584

Alignments:

                      v                                                            v       NC
                 (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgU.GGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71    
                 GG GA :UAGCUCAG  GGUAGAGCG:C:G:+U   A :C:G:AGG   :GGG UCGA  CCC: : UC CCA
    chr17 296512 GGGGAUGUAGCUCAGAuGGUAGAGCGACCGCUUAGCAUGCGGUAGGuAUUGGGAUCGAUACCCAACUUCUCCA 296584
                 ************************************************************************* PP

>>

RNAfold
>chr17_18
GGGAUGUAGCUCAGAUGGUAGAGCGACCGCUUAGCAUGCGGUAGGUAUUG
GGAUCGAUACCCAACUUCUCCA
((((.((.((((........)))).(((((.......))))).(((((((....)))))))..)).)))).. (-23.30)

Length sequence

: 72

Length match:

71