chr17_3

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

33.0

E-value:

0.00013

From sequence:

102577

To sequence:

102488

Alignments:

                                        v                v   v                  vv               v                NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<<<---<<<<<_____~~~~~>>>>>>>>>->>->>>>>>>>>>>->>-->>->>>:: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGGGCCAaGuuCCCUCUG*[3]*GGaaCGCCCUuCCCCCCCucCucCACCUgGCGaaCUC 94    
                  U    UU+UUG:: G:  GGGG G::GGG GG G:U::G CAA        UG         + C:: :CCCCCCC::C CC CC  :C ::C  
    chr17 102577 AUUUCCUUCUUGGGAGU--GGGGUGGGGGGUGGGGGUUCGACAA--------UG*[2]*----AGCGACCCCCCCCCCUCUCCCCCC-ACCCCCCA 102500
                 ****************8..*********************9887........44..4......39******************8888.899***** PP

                              NC
                 :::::::::::: CS
  RF01918     95 CUACUCGUCCUU 106   
                 CU    GU C U
    chr17 102499 CUGGCGGUUCAU 102488
                 ************ PP

>>

RNAfold
>chr17_3
GUACAAGAUGAACCGCCAGUGGGGGGUGGGGGGAGAGGGGGGGGGGUCGC
UGUCAUUGUCGAACCCCCACCCCCCACCCCACUCCCAAGAAGGAAAUCGA
UGCAC
(((...(((...((.......((((((((((...(.((((((((((((((.......).)).)))))).)))))).)))))))))).....))..)))..))).. (-51.30)

Length sequence

: 105

Length match:

88