chr17_4

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

29.8

E-value:

0.0012

From sequence:

440757

To sequence:

440868

Alignments:

                                                                                                                  NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<<<---<<<<<_~~~~~~>>>>>>>>>->>->>>>>>>>>>>->>-->>->>>::::: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGGGCCAaGuuCCC*[ 7]*GGaaCGCCCUuCCCCCCCucCucCACCUgGCGaaCUCCUA 97    
                     G  UA U  :G::  GGG:::::G:G G  G: GG   AAG::C:C      :G::C  CC :CC CC:C:::::C CC  ::G:    CU 
    chr17 440757 ACGCGCGUAAUGGAGAAGAGGGGGAGGGAGGGGGGG-GGGGAAAGAGCGC*[14]*CGCUCUUCCCUCCUCCUCCUUUUCGCCCUUUGUUUCUCUU 440859
                 ************************999999777555.5555577777776...9..77777666667778899999******************** PP

                           NC
                 ::::::::: CS
  RF01918     98 CUCGUCCUU 106   
                 CU   CCUU
    chr17 440860 CUUUGCCUU 440868
                 ********* PP

>>

RNAfold
>chr17_4
CGCGCGUAAUGGAGAAGAGGGGGAGGGAGGGGGGGGGGGAAAGAGCGCAA
GAAGAAAAGUGACGCUCUUCCCUCCUCCUCCUUUUCGCCCUUUGUUUCUC
UUCUUUGCCUU
...(((....(((((((((((.((((.((((((((((((.(((((((((..........)).))))))).)))))))))))))))).)))))...))))))....)))... (-55.60)

Length sequence

: 111

Length match:

110