chr17_5

cmsearch-Rfam

Family :

mir-156

Id:

RF00073

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035195 gene silencing by miRNARF00073

Description:

This family represents the plant microRNA (miRNA) precursor mir-156. This miRNA has now been predicted or
experimentally confirmed in a range of plant species (MIPF:MIPF0000008). Animal miRNAs are transcribed as ~70nt
precursors and subsequently processed by the Dicer enzyme to give a ~22nt product. In plants
the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be
involved in processing. In this case the mature sequence comes from the 5' arm of
the precursor, and both Arabidopsis and rice genomes contain a number of related miRNA precursors
which give rise to almost identical mature sequences. The extents of the hairpin precursors are
not generally known and are estimated based on hairpin prediction. The products are thought to
have regulatory roles through complementarity to mRNA.

Score:

40.7

E-value:

5.6e-06

From sequence:

570798

To sequence:

570882

Alignments:

                                         v                                      v                          NC
                 <<<<<<<<<<<<<<<<<<<<<-<<<_______.______________________________>>>->>>>>>>>>>>>->>>>>>>>> CS
  RF00073      1 guGACaGaaGAGaGUGAGCACACacgGuggcU.cUUgcaUauuuuAugcauuUGCUuGaAGCUguGcGUGCUCACuCUCUuuCuGUCac 88    
                 :: :CAGA G:G:GUG:GC:C CA G + G    U GC+U+U  U UG+ U UG  UG AG U UGCG:GC:CAC:C:C  UCUG: ::
    chr17 570798 CAUGCAGA-GCGGGUGGGCGCGCAGGUGAGGCaAUGGCGUGU-GUGUGUGUGUGUGUGUAGGUGUGCGCGCCCACCCGC--UCUGCAUG 570882
                 ********.9**************976655554999999999.555999999**************************9..9******* PP

>>

RNAfold
>chr17_5
GCAUGCAGAGCGGGUGGGCGCGCAGGUGAGGCAAUGGCGUGUGUGUGUGU
GUGUGUGUAGGUGUGCGCGCCCACCCGCUCUGCAUGCA
((((((((((((((((((((((((....(.(((...(((........)))...))).).....)))))))))))))))))))))))). (-61.90)

Length sequence

: 88

Length match:

83