chr17_6

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

29.8

E-value:

0.0095

From sequence:

440759

To sequence:

440865

Alignments:

                         v                               v                         v                              NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<-<<~~~~~~>>-->>>>>>>>>>>->>>>>>>>>>-->>>->>>->>>> CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGaACa*[70]*uGCCuCCCAUuCCuAucguUCucaggugCUCCuuCCucuu 160   
                 G   G AA ::::A::A   G:GG    ::G :::G :GG A G:G: CA      UG C:C:C U CC:  ::: C::    GC:C U:: ::::
    chr17 440759 GCGCGUAAUGGAGAAGAG--GGGGAGGGAGGGGGGGGGGGAAAGAGCGCA*[10]*UGACGCUCUUCCCUCCUCCUCCUUUUCGCCC-UUUGUUUC 440855
                 **************9999..99999************************9...9..9***************************999.9******* PP

                 v          NC
                 >::::::::: CS
  RF01911    161 CCUUuuaguU 170   
                  CUU U++  
    chr17 440856 UCUUCUUUGC 440865
                 ********** PP

RNAfold
>chr17_6
AAAGAAAACACGUAAACAUGCACACACGUACGCGCGUAAUGGAGAAGAGG
GGGAGGGAGGGGGGGGGGGAAAGAGCGCAAGAAGAAAAGUGACGCUCUUC
CCUCCUCCUCCUUUUCGCCCUUUGUUUCUCUUCUUUGCCUUCAUGAAGGA
CCCACGAAAGUCAUAACGCG
..........((((....((....))..))))(((((.(((((((((((((.((((.((((((((((((.(((((((((..........)).))))))).)))))))))))))))).)))))...))))).......((((....))))............))).))))) (-61.60)

Length sequence

: 170

Length match:

105