chr18_1

cmsearch-Rfam

Family :

HOXA11-AS1_6

Id:

RF02142

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010629 negative regulation of gene expression

Description:

not description

Score:

20.4

E-value:

0.0049

From sequence:

136046

To sequence:

136134

Alignments:

                 :::::::::::::::::::.....::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
  RF02142     51 AAAAUGUUUuGGAGGAAGA.....AAAACAAAGGCAGGAAGUGGCgGCgGcCUGACGGUGCGUGUGUGUCUgcGgaGAAGGGAGGGAGc 134   
                 AAAA G  U  GAGG AGA      AAA AA  G  GGA GU G g C G C GAC GUG GUGUGUGU Ug+G     GGG  G  G 
    chr18 136046 AAAAAGCCUAAGAGGCAGAugagcGAAAAAAGAGAGGGAUGUAGUGCCUGUCAGACUGUGUGUGUGUGUGUGUGUUCGUGGGUCGACGG 136134
                 34444555555555555542212112222233344467888999999999**********99999999999988776666655444444 PP

>>

RNAfold
>chr18_1
CGGUGCCGGUAGCGGUGGCAGUGAUAUGGACCGGUUCGGUUUAGAAAAAG
CCUAAGAGGCAGAUGAGCGAAAAAAGAGAGGGAUGUAGUGCCUGUCAGAC
UGUGUGUGUGUGUGUGUGUUCGUGGGUCGACGGCAGUCCUGAUGCUCGCG
UCAAGGGCUAGAGGCUGGGCGUACGGGU
((.(((((.......))))).))...(((((((...)))))))...........(.(.(((.((..(((......((.(((.((...)).))).))......)))..)).))).).).((((((.(((..((((((((((((((....)))).))))))....))))))).)))))). (-52.50)

Length sequence

: 178

Length match:

87