chr18_13

cmsearch-Rfam

Family :

TB10Cs4H4

Id:

RF01534

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01534

Description:

not description

Score:

38.4

E-value:

2.8e-05

From sequence:

175890

To sequence:

175828

Alignments:

                        vv         v   v                 v   v         vv           NC
                 ::<<<<<<<-----<<<<<<<-<---<<<________>>>>->>>>>>>----->>>>->>>:::: CS
  RF01534      1 GAGGAggcCCGUAGCCACggcacCUUgCCUauUUgGUGGcgCgcuGUGGGUGGUGgcuUUCCaAGA 66    
                 GAGGAG:  CGUAGCC:C GCA    ::C A+U G UG::  GC G:GGGUG U  :U UCCAAGA
    chr18 175890 GAGGAGAACCGUAGCCGCUGCAA---CUCGACUAGCUGAGAUGCCGCGGGUGAUACUUCUCCAAGA 175828
                 **********************9...*********9****************************** PP

>>

RNAfold
>chr18_13
CUCUUGGAGAAGUAUCACCCGCGGCAUCUCAGCUAGUCGAGUUGCAGCGG
CUACGGUUCUCCUCAU
.....((((((.(.....((((.(((.(((........))).))).))))....).)))))).... (-22.60)

Length sequence

: 66

Length match:

61