chr18_14

cmsearch-Rfam

Family :

TB10Cs4H4

Id:

RF01534

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01534

Description:

not description

Score:

38.4

E-value:

2.8e-05

From sequence:

315384

To sequence:

315446

Alignments:

                        vv         v   v                 v   v         vv           NC
                 ::<<<<<<<-----<<<<<<<-<---<<<________>>>>->>>>>>>----->>>>->>>:::: CS
  RF01534      1 GAGGAggcCCGUAGCCACggcacCUUgCCUauUUgGUGGcgCgcuGUGGGUGGUGgcuUUCCaAGA 66    
                 GAGGAG:  CGUAGCC:C GCA    ::C A+U G UG::  GC G:GGGUG U  :U UCCAAGA
    chr18 315384 GAGGAGAACCGUAGCCGCUGCAA---CUCGACUAGCUGAGAUGCCGCGGGUGAUACUUCUCCAAGA 315446
                 **********************9...*********9****************************** PP

RNAfold
>chr18_14
UGAGGAGAACCGUAGCCGCUGCAACUCGACUAGCUGAGAUGCCGCGGGUG
AUACUUCUCCAAGAGC
...((((((...((.((((.(((.((((......)))).))).)))).))....))))))...... (-25.20)

Length sequence

: 66

Length match:

61