chr18_2

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

20.7

E-value:

0.0078

From sequence:

325299

To sequence:

325517

Alignments:

                    v    vvvv      vv vv          vvvvv         vvvv  v     vvvv                                  NC
                 [[[[[[[[[[[[[[[-[[[[-[[[[[[,,,,,,(((((--((--(((((((((((,,<<<<<<<-<<<-----<<<--<<<-~~~~~~->>>->>> CS
  RF02400    174 GGauCGcguCaggacUGaagGaGaGCGAAuCuCaGGGCUCgGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGu*[29]*CCuCCCGC 292   
                 :G: :GCG    ::C :: +G  :GCG  U U      U GGU  GG G+ GG G  G:+A G       G  G GGAGAGU       CUC C C
    chr18 325299 AGGAAGCG---AUGCCUGCUG--UGCGCGUGUG----UUAGGU-GGGGGUGGG-GUAGGAAGG-----AGGAGGUGGAGAGU*[19]*ACUCACGC 325391
                 88889994...5666665544..4444333333....222332.233333333.222322222.....23344777777765...5..46666666 PP

                            vvvv      v                               v             v  vvvv          vvvvv     v  NC
                 ------>>>->>>>>>>,,,,<<__________________________...>>,,,,,,,,,,,,)))))))))-))--))--))))),,,,<<< CS
  RF02400    293 uUCCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCcCc...guacccccCuCUCUCuCuuuCuCGCaucCuCUGCCCuCuCACCG 385   
                 +UC  C         :C   C C ACC CC CC  UU C  UC CCCCC   G  +++ CCUCU UCUCU    CGC   CUCU +C+     : :
    chr18 325392 CUCUUC---------CCUUCCACCACCACCACCUGUUUCUCUCACCCCCuucGCCUUUGCCUCUUUCUCU----CGCUCGCUCUCUCUGUAGUGAU 325474
                 555544.........3444444455555555555555555555555554111444444455555555555....5555555555555568888999 PP

                                 v     vvvv      vvvv        v    NC
                 <-<<_______>>->>>>]]]]]]]]]]-]]]]]]]]---]]]-]]]] CS
  RF02400    386 gCGCGccGGGCGCAcCGGCGCuCuuuuCCguccuGauUUugCGuguCC 433   
                 G GC    GGCGCAC: :CGC:C   ::CG::  + UUUUGC:U :C:
    chr18 325475 GAGC---AGGCGCACAGCCGCACG--CACGCACCUGUUUUGCUUACCU 325517
                 9999...799********998886..5567777777888899988888 PP

>>

RNAfold
>chr18_2
GUUUGCUAGGUGUCGUGUUGUUUGUUGGUUGGUUGGAGGGCUACAAAGUG
CGCCAAGCGCUUGCCGCCCCCCCCCCUCCCUCCCGCCCUGUGGUGUUCUU
UUCUGUUAUGUGUUUCUUAUCUUGUAGGAAGCGAUGCCUGCUGUGCGCGU
GUGUUAGGUGGGGGUGGGGUAGGAAGGAGGAGGUGGAGAGUACCCCAUCC
GCCAGGCCCCACUCACGCCUCUUCCCUUCCACCACCACCACCUGUUUCUC
UCACCCCCUUCGCCUUUGCCUCUUUCUCUCGCUCGCUCUCUCUGUAGUGA
UGAGCAGGCGCACAGCCGCACGCACGCACCUGUUUUGCUUACCUUCCUCC
AUCCUGUUCAUUUUUUGUUUUCCUCCUCGUCUUUGGUGUUGCCACGCACU
CUUCAUCGGUUAAACAGAAAAUGAAGAAACGACGCGCACACGCAUGGGCA
CGCAUACAUGCACAAGCUGU
....(((..(((.((((((((.....((..((..((.((((....((((((.....))))))...))))))..))..)).....((((((((((((((.((((.......((((((((((...)))))))))).(((.(((.(((((..(((((..((((((((((((((.((((((((((((((..((((...((........))....)))).)))))))).))))))))).)))))..........))))))............((((....((((((((.((.......))))))).))).)))))))))..)))))))).)))............................((((((((((((((....((........(((((......))))).......))..)))))))))))))))))).))...)))).)))).))))..))).)))))))).)))... (-159.90)

Length sequence

: 470

Length match:

217